Selected Publications

Batut P.J., Bing X.Y., Sisco Z., Raimundo J., Levo M., Levine M.S. (2022). Genome organization controls transcriptional dynamics during development. Science 375(6580):566-570.

Perspective by Gaskill & Harrison in Science 375(6580).

Bing X.Y., Batut P.J., Levo M., Levine M., Raimundo J. (2020). SnapShot: The Regulatory Genome. Cell 182(6):1674.

Batut, P.J. & Gingeras, T.R. (2017). Conserved noncoding transcription and core promoter regulatory code in early Drosophila development. eLife 2017;6:e29005.


Batut, P., Dobin, A., Plessy, C., Carninci, P., and Gingeras, T.R. (2013). High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Genome Research 23(1):169-180.

Dobin, A., Davis, C., Schlesinger, F., Drenkow, J., Zaleski, C., Jha, S., Batut, P., Chaisson, M., Gingeras, T.R. (2013). STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29(1):15-21.

Djebali, S. et al. (2012). Landscape of transcription in human cells. Nature 489(7414):101-108.

ENCODE Project Consortium (2012). An integrated encyclopedia of DNA elements in the human genome. Nature 489(7414):57-74.